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Non-coding DNA regions within a gene are referred to as


A) introns.
B) exons.
C) templates.
D) transposons.

E) A) and B)
F) B) and C)

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The sequencing method that cuts the DNA of an entire chromosome into small fragments and then clones these fragments is called


A) shotgun sequencing.
B) clone-by-clone sequencing.
C) RFLP sequencing.
D) consensus sequencing.

E) None of the above
F) A) and B)

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The majority of DNA in a human can be described as


A) composed of short interspersed elements.
B) non-coding.
C) simple sequence repeats.
D) segmental duplications.

E) A) and D)
F) A) and B)

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The reason segmental duplications pose a logistical challenge in the proper alignment of DNA sequences is that they


A) are inherently repetitive.
B) contain large numbers of LINEs, which interfere with sequence annotation.
C) interfere with BLAST analysis.
D) are often found in areas of constitutive heterochromatin.

E) None of the above
F) A) and B)

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A

The inclusive term that describes all of the DNA in the nucleus of a cell is its


A) genome.
B) chromosome.
C) gene.
D) proteome.

E) A) and B)
F) None of the above

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Recombination frequency between genes can be used to generate a


A) genetic map.
B) physical map.
C) restriction map.
D) haplotype map.

E) B) and D)
F) A) and D)

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Mitochondria and chloroplasts are bacterial relatives living within eukaryotes as a result of


A) synteny.
B) exosymbiosis.
C) endosymbiosis.
D) draft sequencing by the nucleosome.

E) A) and C)
F) None of the above

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C

Your research group has recently determined the complete genomic sequence of the organism Examus biologisium.You instruct your group to begin sequence annotation, which involves


A) shotgun cloning.
B) the alignment of contigs.
C) the identification of open reading frames.
D) the construction of a genetic map.

E) B) and C)
F) None of the above

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Distances on a genetic map are measured in _____ units.


A) centromere
B) DNA
C) dalton
D) centimorgan

E) A) and C)
F) B) and C)

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The best technique for detecting chromosomal abnormalities is


A) EST
B) FISH
C) STS
D) SNP

E) B) and C)
F) C) and D)

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Silent copies of genes that have been inactivated by mutations are called


A) pseudogenes.
B) clones.
C) exons.
D) introns.

E) A) and B)
F) B) and D)

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Linkage disequilibrium is the tendency for


A) be totally randomized during meiosis.
B) be non-randomly associated during meiosis.
C) to be rearranged during meiosis because of crossing over.
D) link together within certain blocks along the chromosome.

E) All of the above
F) None of the above

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The relative location of genes on a chromosome as determined by recombination frequencies is illustrated in a _______ map.


A) DNA
B) genetic
C) chromosomal
D) physical

E) C) and D)
F) B) and D)

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When comparing the genomes of prokaryotes verse eukaryotes, it can be accurately stated that


A) eukaryotic genomes are larger than prokaryotic genomes.
B) eukaryotic genomes are smaller than prokaryotic genomes.
C) the size of the organism determines the size of the genome.
D) larger and more complex organisms have more genes than smaller, less complex organisms.

E) A) and B)
F) B) and C)

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A

Given a sequencing reaction length of approximately 500 successive nucleotides, what is the absolute minimum number of sequencing reactions needed to determine the complete human genome, excluding overlap and redundancy?


A) 3.1 billion
B) 6200
C) 12.4 million
D) 6.2 million

E) A) and B)
F) A) and C)

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In vertebrates, the family of myogenic regulatory factors (MRFs) plays a major role in muscle development.This family consists of four related genes which have distinct but overlapping functions.This gene family is represented by only a single gene in Drosophila, called nautilus.You want to know whether nautilus plays a role like all of the MRFs put together, or more like one in particular.What is a quick and easy way to begin to address this question?


A) Compare the DNA and protein sequences of all the genes to determine if nautilus is more similar to one MRF than another.
B) Use a DNA microarray to compare gene activation patterns between nautilus and the MRFs.
C) Compare the proteome of a cell expressing nautilus to the those of cells expressing each of the MRFs in turn.
D) Generate four transgenic Drosophila strains that express the MRFs in a mutant nautilus background.

E) A) and D)
F) C) and D)

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When comparing the actual number of genes, the organism with the highest number is


A) rice.
B) human.
C) fruit fly.
D) yeast.

E) A) and B)
F) B) and D)

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The organism with the largest relative genome size is


A) rice.
B) human.
C) fruit fly.
D) yeast.

E) B) and D)
F) All of the above

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Using actual landmarks within DNA sequences, scientists can generate a _______ map.


A) genetic
B) DNA
C) physical
D) chromosomal

E) A) and D)
F) All of the above

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How did the rice genome project influence other genome projects?


A) It was the first genome sequenced, so it proved it could be done.
B) It sped up the genome analysis of other cereal crops, due to synteny.
C) It sped up the analysis of the human genome, since rice has even more genes.
D) It helped analysis of all genomes, since it was the basis of the ENCODE algorithms.

E) A) and D)
F) B) and C)

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